#! /bin/csh # # User set LSF resource directives for IBM/AIX batch job: # #BSUB -J tiegcm_trunk #BSUB -P 24100004 ##BSUB -q regular ##BSUB -n 32 #BSUB -q debug #BSUB -n 8 #BSUB -o tiegcm_trunk.%J.out #BSUB -e tiegcm_trunk.%J.out #BSUB -N #BSUB -u $LOGNAME@ucar.edu #BSUB -W 1:00 # # User set shell variables for TIEGCM IBM/AIX job: # (modeldir, execdir, and utildir may be relative or absolute paths) # # modeldir: Root directory to model source (may be SVN working dir) # execdir: Directory in which to build and execute (will be created if necessary) # input: Namelist input file (will use default if not provided) # output: Stdout file from model execution (will be created) # make: Build file with platform-specific compile parameters (see scripts dir) # mpi: TRUE/FALSE for MPI or non-MPI run # nproc: Number of processors for 64-bit Linux MPI run # modelres: Model resolution (5.0 or 2.5) # debug: If TRUE, build and execute a "debug" run # exec: If TRUE, execute the model (build only if FALSE) # utildir: Dir containing supporting scripts (usually $modeldir/scripts) # set modeldir = tiegcm_trunk set execdir = tiegcm_trunk-aix #set input = tiegcm_trunk.inp set output = tiegcm_trunk.out set make = Make.bluefire set mpi = TRUE set modelres = 5.0 set debug = FALSE set exec = TRUE set utildir = $modeldir/scripts # #- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # Shell Script for TIEGCM IBM/AIX job #- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - # # Env vars for AIX: # setenv MP_LABELIO YES setenv MP_STDINMODE 0 setenv MP_SHARED_MEMORY yes setenv MEMORY_AFFINITY MCM setenv AIXTHREAD_SCOPE S setenv MALLOCMULTIHEAP true # set mycwd = `pwd` echo "" ; echo "${0}:" echo " Begin execution at `date`" echo " Current working directory: $mycwd" echo " System: `uname -a`" echo "" # # Verify directories and make_machine file (make execdir if necessary). # Get absolute path for dirs that are accessed from the execdir. # if (! -d $modeldir) then echo ">>> Cannot find model directory $modeldir <<<" exit 1 endif set model = $modeldir:t if (! -d $utildir) then echo ">>> Cannot find model scripts directory $utildir <<<" exit 1 endif set utildir = `perl $utildir/abspath $utildir` set srcdir = $modeldir/src if (! -d $srcdir) then echo ">>> Cannot find model source directory $srcdir <<<" exit 1 endif set srcdir = `perl $utildir/abspath $srcdir` if (! -d $execdir) then echo "Making exec directory $execdir" mkdir -p $execdir endif if (! -f $make) set make = $utildir/$make if (! -f $make) then echo ">>> Cannot find make_machine file $make <<<" exit 1 endif set make = `perl $utildir/abspath $make` if ($modelres != 5.0 && $modelres != 2.5) then echo ">>> Unknown model resolution $modelres <<<" exit 1 endif # # Copy make files to execdir if necessary: # if (! -f $execdir/$make) cp $make $execdir if (! -f $execdir/Makefile) cp $utildir/Makefile $execdir if (! -f $execdir/mkdepends) cp $utildir/mkdepends $execdir # # Make default namelist input file if not provided by user: # if ($?input) then if (! -f $input) then echo ">>> Cannot find namelist input file $input <<<" exit 1 endif else set input = \ `perl $utildir/mknamelist -model=$model -modelres=$modelres` || \ echo ">>> Error from mknamelist: fileout = $input" && exit 1 endif set input = `perl $utildir/abspath $input` set output = `perl $utildir/abspath $output` # # Copy defs header file to execdir, if necessary, according to # requested resolution: # if (! -f $execdir/defs.h) then if ($modelres == 5.0) then cp $srcdir/defs.5.0 $execdir/defs.h else cp $srcdir/defs.2.5 $execdir/defs.h endif endif # # Report to stdout: # set svnversion = `svnversion $modeldir` || set svnversion = "[none]" echo -n " Model directory: $modeldir" && echo " (SVN revision $svnversion)" echo " Exec directory: $execdir" echo " Source directory: $srcdir" echo " Make machine file: $make" echo " Namelist input: $input" # # cd to execdir and run make: # cd $execdir || echo ">>> Cannot cd to execdir $execdir" && exit 1 echo "" echo "Begin building $execdir in `pwd`" # # Build Make.env file in exec dir, containing needed env vars for Makefile: # cat << EOF >! Make.env MAKE_MACHINE = $make DIRS = . $srcdir MPI = $mpi EXECNAME = $model NAMELIST = $input OUTPUT = $output DEBUG = $debug SVN_VERSION = $svnversion EOF # # Build the model: # gmake -j4 all || echo ">>> Error return from gmake all" && exit 1 # # # Load Sharing Facility batch job execution: # if ($exec == "TRUE") then set model = ./$model echo "IBM/AIX job: Executing $model" echo "Model output will go to $output" if ($?LSF_ENVDIR && $mpi == "TRUE") then # MPI LSF job echo "" ; echo "Executing model $model with mpirun.lsf from `pwd` at `date`" echo "Model output will go to $output" setenv TARGET_CPU_LIST "-1" mpirun.lsf /usr/local/bin/launch $model < $input >&! $output || \ echo ">>> ${0} Execution of mpirun.lsf $model FAILED at `date`" && \ echo "See output in $output" # # non-LSF job -- try interactive execution # else echo "" ; echo "Executing model $model on command line from `pwd` at `date`" echo "Model output will go to $output" $model < $input >&! $output || \ echo ">>> ${0} Execution of $model FAILED at `date`" && \ echo "See output in $output" endif else echo "I am NOT executing $model (exec was not set)" endif # # Separate output files by MPI task: # (we are still in $execdir, but $output contains full path to $wrkdir) # perl $utildir/mklogs $output || \ echo ">>> ${0}: Error from $execdir/mklogs on output $output"